NIH 3D Viruses Models
Generated on: 2025-07-08 08:59:40
Total models: 336
1. Zophobas morio black wasting virus
Link: https://3d.nih.gov/entries/3DPX-021725
Description: Zophobas morio black wasting virus strain UT-morio virion structure
2. Zophobas morio black wasting virus capsid
Link: https://3d.nih.gov/entries/3DPX-021726
Description: Zophobas morio black wasting virus capsid
3. Electron cryo-microscopy of Chikungunya virus
Link: https://3d.nih.gov/entries/3DPX-002175
Description: PDB Classifiation: VIRUS
4. Features of Reovirus Outer-Capsid Protein mu1 Revealed by Electron and Image Reconstruction of the virion at 7.0-A Resolution
Link: https://3d.nih.gov/entries/3DPX-002176
Description: PDB Classifiation: VIRUS
5. Poliovirus type 3 (strain Saukett) stabilised virus-like particle (PV3 SC8).
Link: https://3d.nih.gov/entries/3DPX-021852
Description: PDB Classification: VIRUS LIKE PARTICLE
6. Atomic-level structure of the entire HIV-1 capsid
Link: https://3d.nih.gov/entries/3DPX-021853
Description: PDB Classification: VIRUS
7. Filamentous Bacteriophage PH75
Link: https://3d.nih.gov/entries/3DPX-021854
Description: PDB Classification: VIRUS
8. Faba bean necrotic stunt virus (FBNSV)
Link: https://3d.nih.gov/entries/3DPX-021949
Description: PDB Classification: VIRUS
9. EMD-3148: Electron cryo-microscopy of chikungunya virus in complex with neutralizing antibody Fab 4J21
Link: https://3d.nih.gov/entries/3DPX-002223
Description: https://skfb.ly/INMR EMDB › EMD-3148 Single particle reconstruction 16.5Å resolution Electron cryo-microscopy of chikungunya virus in complex with neutralizing antibody Fab 4J21 http://www.ebi.ac.u...
10. EMD-3148: Electron cryo-microscopy of chikungunya virus in complex with neutralizing antibody Fab 4J21
Link: https://3d.nih.gov/entries/3DPX-002228
Description: EMDB › EMD-3148 Single particle reconstruction 16.5Å resolution Electron cryo-microscopy of chikungunya virus in complex with neutralizing antibody Fab 4J21 http://www.ebi.ac.uk/pdbe/entry/emdb/EMD...
11. Model for bacteriophage fd from cryo-EM
Link: https://3d.nih.gov/entries/3DPX-002364
Description: PDB Classifiation: VIRUS
12. Insight into the assembly of viruses with vertical single beta-barrel major capsid proteins
Link: https://3d.nih.gov/entries/3DPX-002366
Description: sub-tomogram averaging of five-fold vertices with spike-ON. This has been then gaussian filterd to 15 Ang.
13. The structure of the immature HIV-1 capsid in intact virus particles at sub-nm resolution
Link: https://3d.nih.gov/entries/3DPX-002367
Description: Subtomogram averaging reconstruction of the immature HIV-1 capsid from intact virus particles
14. PROCAPSID OF BACTERIOPHAGE PHIX174
Link: https://3d.nih.gov/entries/3DPX-002373
Description: PDB Classifiation: VIRUS
15. STRUCTURAL FACTORS THAT CONTROL CONFORMATIONAL TRANSITIONS AND SEROTYPE SPECIFICITY IN TYPE 3 POLIOVIRUS
Link: https://3d.nih.gov/entries/3DPX-002406
Description: PDB Classifiation: VIRUS
16. METHODS USED IN THE STRUCTURE DETERMINATION OF FOOT AND MOUTH DISEASE VIRUS
Link: https://3d.nih.gov/entries/3DPX-002408
Description: PDB Classifiation: VIRUS
17. FAB COMPLEXED WITH INTACT HUMAN RHINOVIRUS
Link: https://3d.nih.gov/entries/3DPX-002410
Description: PDB Classifiation: Virus/Immune system
18. CryoEM single particle reconstruction of prolate head of bacteriophage T4
Link: https://3d.nih.gov/entries/3DPX-002436
Description: EMDB › EMD-6323 http://www.ebi.ac.uk/pdbe/entry/emdb/EMD-6323 Single particle reconstruction 10Å resolution CryoEM single particle reconstruction of prolate head of bacteriophage T4 Map released: 2...
19. CryoEM single particle reconstruction of prolate head of bacteriophage T4
Link: https://3d.nih.gov/entries/3DPX-002437
Description: EMDB › EMD-6323 http://www.ebi.ac.uk/pdbe/entry/emdb/EMD-6323 Single particle reconstruction 10Å resolution CryoEM single particle reconstruction of prolate head of bacteriophage T4 Map released: 2...
20. CryoEM single particle reconstruction of prolate head of bacteriophage T4
Link: https://3d.nih.gov/entries/3DPX-002439
Description: EMDB › EMD-6323 http://www.ebi.ac.uk/pdbe/entry/emdb/EMD-6323 Single particle reconstruction 10Å resolution CryoEM single particle reconstruction of prolate head of bacteriophage T4 Map released: 2...
21. CryoEM single particle reconstruction of prolate head of bacteriophage T4
Link: https://3d.nih.gov/entries/3DPX-002440
Description: EMDB › EMD-6323 http://www.ebi.ac.uk/pdbe/entry/emdb/EMD-6323 Single particle reconstruction 10Å resolution CryoEM single particle reconstruction of prolate head of bacteriophage T4 Map rele...
22. EMD-3109: Insight into the assembly of viruses with vertical single beta-barrel major capsid proteins
Link: https://3d.nih.gov/entries/3DPX-002496
Description: You can download this model from: http://3dprint.nih.gov/discover/3dpx-002496 EMD-3109 http://www.ebi.ac.uk/pdbe/entry/emdb/EMD-3109/ Single particle reconstruction 13Å resolution Insight in...
23. Cryo-EM structure of Dengue virus serotype 2
Link: https://3d.nih.gov/entries/3DPX-002499
Description: EMDB › EMD-2969 http://www.ebi.ac.uk/pdbe/entry/emdb/EMD-2969 Single particle reconstruction 21Å resolution Cryo-EM structure of Dengue virus serotype 2 strain New Guinea-C complexed with human ant...
24. SA11 Rotavirus trypsinized Triple Layered Particle
Link: https://3d.nih.gov/entries/3DPX-000275
Description: 3DR of tripsinized SA11 strain rotacirus TLP
25. Cryo-electron microscopic reconstruction of wild rabbit hemorrhagic disease virus
Link: https://3d.nih.gov/entries/3DPX-002790
Description: Reconstruction of wild rabbit hemorrhagic disease virus; The final map was sharpened using b factor -300 A2 to 4.5 angstrom and low passed to 5 angstrom.
26. HRV2 full native capsid
Link: https://3d.nih.gov/entries/3DPX-002822
Description: Reconstruction of HRV2 full native particle
27. VHH complexes with poliovirus: cryo-electron microscopy studies at near-atomic resolution
Link: https://3d.nih.gov/entries/3DPX-002899
Description: Reconstruction of VHH-poliovirus (PVSS21E - Mahoney Type 1)
28. Electron cryo-microscopy of chikungunya virus in complex with neutralizing antibody Fab CHK265
Link: https://3d.nih.gov/entries/3DPX-002910
Description: Reconstruction of chikungunya virus in complex with Fab
29. Influenza virus
Link: https://3d.nih.gov/entries/3DPX-000030
Description: Influenza virus derived from electron microscopy provided by Bernard Heymann (NCI); blue: hemagglutinin, red: neuraminidase; yellow: viral membrane.
30. Molecular Structure of the Native HIV-1 gp120 trimer bound to b12: Membrane region
Link: https://3d.nih.gov/entries/3DPX-000302
Description: b12-bound HIV-1 BaL membrane
31. HIV Capsid
Link: https://3d.nih.gov/entries/3DPX-003150
Description: The full capsid of Human Immodeficiency Virus, composed of hexamers of the 'capsid protein'. This model was generated using cellpack, credit to Graham Johnson. Thanks to Janet Iwasa for...
32. Resolution and Probabilistic Structural Models of Subcomponents Derived from CryoEM Maps of Mature P22 Bacteriophage
Link: https://3d.nih.gov/entries/3DPX-003160
Description: P22 mature virion
33. The structure of an infectious P22 virion shows the signal for headful DNA packaging.
Link: https://3d.nih.gov/entries/3DPX-003161
Description: Surface rendered view of the asymmetric P22 Virion
34. The cryo-EM structure of Zika Virus
Link: https://3d.nih.gov/entries/3DPX-003170
Description: PDB Classifiation: VIRUS
35. Atomic model of an infectious rotavirus particle
Link: https://3d.nih.gov/entries/3DPX-003183
Description: Infectious rotavirus particle. Center of the virus is at 0,0,0 and the map is a quadrant of the actual map.
36. Atomic model of an infectious rotavirus particle
Link: https://3d.nih.gov/entries/3DPX-003184
Description: PDB Classifiation: VIRUS
37. cryo-EM reconstruction of West Nile virus
Link: https://3d.nih.gov/entries/3DPX-003185
Description: PDB Classifiation: VIRUS
38. Faustovirus
Link: https://3d.nih.gov/entries/3DPX-003305
Description: None
39. Electron cryo-microscopy of Human Papillomavirus Type 16 capsid
Link: https://3d.nih.gov/entries/3DPX-003325
Description: PDB Classifiation: VIRUS
40. Electron cryo-microscopy of human papillomavirus 16 and H16.V5 Fab fragments
Link: https://3d.nih.gov/entries/3DPX-003326
Description: PDB Classifiation: VIRUS
41. Cryo-EM reconstruction of quasi-HPV16 complex with H16.14J Fab
Link: https://3d.nih.gov/entries/3DPX-003327
Description: PDB Classifiation: VIRUS/IMMUNE SYSTEM
42. Cryo-EM reconstruction of quasi-HPV16 complex with H16.1A Fab
Link: https://3d.nih.gov/entries/3DPX-003329
Description: PDB Classifiation: VIRUS/IMMUNE SYSTEM
43. The U4 antibody epitope on human papillomavirus 16 identified by cryo-EM
Link: https://3d.nih.gov/entries/3DPX-003330
Description: PDB Classifiation: VIRUS/IMMUNE SYSTEM
44. 1GAV (not automated)
Link: https://3d.nih.gov/entries/3DPX-003648
Description: Appearance similar to pipeline.
45. Faustovirus inner capsid shell
Link: https://3d.nih.gov/entries/3DPX-003656
Description: None
46. 3.6-Angstrom cryoEM structure of human adenovirus type 5
Link: https://3d.nih.gov/entries/3DPX-003752
Description: This entry is obsolete and was removed from the distribution of released PDB entries, and has been superseded by PDB ID 6B1T. It is no longer a Quick Submit but has been re...
47. Pseudo-atomic structure of Human Papillomavirus Type 59 L1 Virus-like Particle
Link: https://3d.nih.gov/entries/3DPX-003848
Description: PDB Classifiation: VIRUS
48. Human Immunodeficiency Virus (HIV) Cutaway Model
Link: https://3d.nih.gov/entries/3DPX-003873
Description: A model of the interior of the HIV virion, derived from a cellpack recipe (http://www.autopack.org/cellpack-recipes/hiv-1) created by Graham Johnson. The cytoplasm component has been dup...
49. Electron cryo-microscopy of a virus-like particle of orange-spotted grouper nervous necrosis virus. PDB 3JBM
Link: https://3d.nih.gov/entries/3DPX-003906
Description: Based on PDB file from RCSB.
50. Visualizing the Adsorption of Cyanophage P-SSP7 to the Marine Cyanobacterium Prochlorococcus MED4 by Electron Cryo-Tomography
Link: https://3d.nih.gov/entries/3DPX-003963
Description: pre-infection conformation of P-SSP7 bacteriophage
51. Cryo-EM structure of Dengue serotype 3 virus at 37 degrees C
Link: https://3d.nih.gov/entries/3DPX-004110
Description: Cryo-EM reconstruction of Dengue virus 3 at 37 degrees C
52. Canine Parvovirus complexed with Fab E
Link: https://3d.nih.gov/entries/3DPX-004163
Description: PDB Classifiation: VIRUS/IMMUNE SYSTEM
53. CRYSTAL STRUCTURE OF MAHONEY STRAIN OF POLIOVIRUS AT 2.2A RESOLUTION
Link: https://3d.nih.gov/entries/3DPX-004315
Description: PDB Classifiation: VIRUS
54. Cryo-EM reconstruction of dengue virus in complex with the carbohydrate recognition domain of DC-SIGN.
Link: https://3d.nih.gov/entries/3DPX-004378
Description: Map representing the difference between reconstructions of dengue virus in complex with CRD domain of DC-SIGN and dengue virus alone. Shows CRDs.
55. Aichi virus 1: empty particle
Link: https://3d.nih.gov/entries/3DPX-004394
Description: Archie Virus 1: Empty particle
56. Cryo-EM structure of the unexpanded particles of Dengue virus serotype 2 strain New Guinea-C in complex with human antibody 2D22 Fab at 37 degrees C. The Fab molecules were added to the virus before 37 degrees C incubation.
Link: https://3d.nih.gov/entries/3DPX-004403
Description: Reconstruction of the unexpanded particles of Dengue virus serotype 2 strain New Guinea-C in complex with human antibody 2D22 Fab at 37 degrees C. The Fab molecules were added to the virus before 3...
57. Crystal structure of PBCV-1 VP54 fitted into a cryo-EM reconstruction of the virophage Sputnik
Link: https://3d.nih.gov/entries/3DPX-004472
Description: PDB Classifiation: VIRUS
58. Electron Cryo-microscopy of Venezuelan Equine Encephalitis Virus TC-83 in complex with neutralizing antibody Fab F5
Link: https://3d.nih.gov/entries/3DPX-004502
Description: Reconstruction of VEEV TC-83 in complex with a Fab fragment from neutralizing antibody F5.
59. BK polyomavirus VP1 pentamer
Link: https://3d.nih.gov/entries/3DPX-004511
Description: Strcuture from 4MJ1 - unliganded BK Polyomavirus VP1 pentamer
60. Location of the dsRNA-dependent polymerase, VP1, in rotavirus particles
Link: https://3d.nih.gov/entries/3DPX-004545
Description: PDB Classifiation: VIRUS
61. Crystal structure of the authentic Flock House virus particle
Link: https://3d.nih.gov/entries/3DPX-004550
Description: PDB Classifiation: VIRUS
62. Structure of Adeno-Associated virus serotype 8
Link: https://3d.nih.gov/entries/3DPX-004603
Description: PDB Classifiation: VIRUS
63. Structure of the L-A virus
Link: https://3d.nih.gov/entries/3DPX-004676
Description: PDB Classifiation: VIRUS
64. Cryo-EM Structure of Immature Zika Virus
Link: https://3d.nih.gov/entries/3DPX-004694
Description: PDB Classifiation: VIRUS
65. STRUCTURE OF TOMATO BUSHY STUNT VIRUS. V. COAT PROTEIN SEQUENCE DETERMINATION AND ITS STRUCTURAL IMPLICATIONS
Link: https://3d.nih.gov/entries/3DPX-004845
Description: PDB Classifiation: VIRUS
66. Capsid Structure of the Propionibacterium acnes Bacteriophage ATCC_Clear
Link: https://3d.nih.gov/entries/3DPX-004883
Description: PDB Classifiation: VIRUS
67. Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions
Link: https://3d.nih.gov/entries/3DPX-004884
Description: PDB Classifiation: VIRUS
68. C-alpha backbone trace of major capsid protein gp39 found in marine virus Syn5.
Link: https://3d.nih.gov/entries/3DPX-004885
Description: PDB Classifiation: VIRUS
69. A new topology of the HK97-like fold revealed in Bordetella bacteriophage: non-covalent chainmail secured by jellyrolls
Link: https://3d.nih.gov/entries/3DPX-004886
Description: PDB Classifiation: VIRUS
70. Capsid structure and its Stability at the Late Stages of Bacteriophage SPP1 Assembly
Link: https://3d.nih.gov/entries/3DPX-004887
Description: PDB Classifiation: VIRUS
71. X-ray structure of the entire lipid-containing bacteriophage PM2
Link: https://3d.nih.gov/entries/3DPX-004888
Description: PDB Classifiation: VIRUS
72. CRYOEM MODEL OF THE VESICULAR STOMATITIS VIRUS
Link: https://3d.nih.gov/entries/3DPX-000495
Description: PDB Classifiation: VIRUS
73. Crystal structure of decameric BFDV Capsid Protein
Link: https://3d.nih.gov/entries/3DPX-004997
Description: PDB Classifiation: VIRUS
74. Crystal structure of 60-mer BFDV Capsid Protein
Link: https://3d.nih.gov/entries/3DPX-004998
Description: PDB Classifiation: VIRUS
75. Structure of Simian Immunodeficiency Virus Envelope Spikes bound with CD4 and Monoclonal Antibody 36D5
Link: https://3d.nih.gov/entries/3DPX-005119
Description: Reconstruction of native SIV envelope spike
76. Subtomogram averaging reconstruction of the Ebola virus nucleocapsid
Link: https://3d.nih.gov/entries/3DPX-000515
Description: Reconstruction of the Ebola virus nucleocapsid
77. The Atomic Structure of Adeno-Associated Virus (AAV-2), a Vector for Human Gene Therapy
Link: https://3d.nih.gov/entries/3DPX-020108
Description: PDB Classifiation: VIRUS
78. Cryo-EM structure of an alphavirus, Sindbis virus
Link: https://3d.nih.gov/entries/3DPX-020109
Description: PDB Classifiation: VIRUS
79. SARS-CoV-2 Virion (NIAID Preliminary Version)
Link: https://3d.nih.gov/entries/3DPX-020315
Description: This was the original NIAID version of the SARS-CoV-2 virion that was generated in January of 2020.
80. Cryo-EM reconstruction of bacteriophage AP205 virus-like particles.
Link: https://3d.nih.gov/entries/3DPX-020351
Description: PDB Classifiation: VIRUS LIKE PARTICLE
81. CryoEM structure of Leviviridae PP7 WT coat protein dimer capsid (PP7PP7-WT)
Link: https://3d.nih.gov/entries/3DPX-020352
Description: PDB Classifiation: VIRUS LIKE PARTICLE
82. E-Protein Colored
Link: https://3d.nih.gov/entries/3DPX-020354
Description: E-Protein Colored
83. Adeno-Associated Virus 2 at 2.8 ang
Link: https://3d.nih.gov/entries/3DPX-020406
Description: PDB Classifiation: VIRUS
84. Phi29 Tail and Collar
Link: https://3d.nih.gov/entries/3DPX-020424
Description: Tail and collar piece of bacteriophage phi29.
85. Phi29 Collar
Link: https://3d.nih.gov/entries/3DPX-020425
Description: Collar structure of bacteriophage phi29.
86. Phi29 Portal Motor Protein
Link: https://3d.nih.gov/entries/3DPX-020426
Description: Portal motor protein structure of bacteriophage phi29.
87. Phi29 Tail
Link: https://3d.nih.gov/entries/3DPX-020427
Description: Tail component of bacteriophage phi29.
88. Phi29 Portal Motor Protein DNA
Link: https://3d.nih.gov/entries/3DPX-020428
Description: DNA to be used in accordance with phi29 portal motor protein component.
89. Phi29 Capsid
Link: https://3d.nih.gov/entries/3DPX-020429
Description: Capsid of bacteriophage phi29.
90. AAV clean mesh for PLA additive print
Link: https://3d.nih.gov/entries/3DPX-020729
Description: AAV model was prepared starting from the PDB file 1lp3, which was imported in Blender using the MolecularNodes AddOn (B. Johnston) to generate a complete viral object. The object was then elab...
91. CryoEM structure and atomic model of the Kaposi's sarcoma-associated herpesvirus capsid
Link: https://3d.nih.gov/entries/3DPX-020898
Description: PDB Classifiation: VIRUS
92. Electron cryo-microscopy of Kaposi's sarcoma-associated herpesvirus virion
Link: https://3d.nih.gov/entries/3DPX-020899
Description: Reconstruction of KSHV virion. Capsid-associated tegument proteins around the penton can be visualized at lower contour level (eg, 0.5).
93. Human cytomegalovirus penton vertex, CVSC-bound configuration
Link: https://3d.nih.gov/entries/3DPX-021034
Description: PDB Classifiation: VIRUS
94. Cryo-EM structure of an alphavirus, Sindbis virus
Link: https://3d.nih.gov/entries/3DPX-021055
Description: This is from a glb file from 6imm that was run through the color by polymer ChimeraX preset.
95. Crystal structure of Human respiratory syncytial virus F variant (construct pXCS847A)
Link: https://3d.nih.gov/entries/3DPX-021100
Description: PDB Classifiation: VIRUS
96. Enterovirus D68 in complex with human monoclonal antibody EV68-228
Link: https://3d.nih.gov/entries/3DPX-021177
Description: PDB Classifiation: VIRUS/IMMUNE SYSTEM
97. Electron cryomicroscopy comparison of the architectures of the enveloped bacteriophages phi6 and phi8.
Link: https://3d.nih.gov/entries/3DPX-021292
Description: EM density map of phi8 virion.
98. The structure of Rhinovirus 16
Link: https://3d.nih.gov/entries/3DPX-021359
Description: PDB Classifiation: VIRUS
99. HUMAN RHINOVIRUS 16 COAT PROTEIN AT HIGH RESOLUTION
Link: https://3d.nih.gov/entries/3DPX-021360
Description: PDB Classifiation: VIRUS
100. Rhinovirus C15 complexed with domains I and II of receptor CDHR3
Link: https://3d.nih.gov/entries/3DPX-021381
Description: PDB Classifiation: VIRUS/CELL ADHESION
101. 4.6 ANGSTROM CRYO-EM RECONSTRUCTION OF TOBACCO MOSAIC VIRUS FROM IMAGES RECORDED AT 300 KEV ON A 4KX4K CCD CAMERA
Link: https://3d.nih.gov/entries/3DPX-021407
Description: PDB Classifiation: VIRUS
102. Mouse norovirus model using the crystal structure of MNV P domain and the Norwalkvirus shell domain
Link: https://3d.nih.gov/entries/3DPX-016834
Description: PDB Classifiation: VIRUS
103. Human hepatitis B virus T=4 capsid strain adyw complexed with assembly effector HAP1
Link: https://3d.nih.gov/entries/3DPX-000017
Description: PDB Classifiation: VIRUS
104. The structures of bacteriophages K1E and K1-5 explain processive degradation of polysaccharide capsules and evolution of new host specificities.
Link: https://3d.nih.gov/entries/3DPX-017037
Description: Model of the complete phage K1-5 particle
105. Cryo-EM structure of AAV-2 in complex with AAVR PKD domains 1 and 2
Link: https://3d.nih.gov/entries/3DPX-017240
Description: PDB Classifiation: VIRUS
106. STRUCTURAL BASIS OF HUMAN PARECHOVIRUS NEUTRALIZATION BY HUMAN MONOCLONAL ANTIBODIES
Link: https://3d.nih.gov/entries/3DPX-001731
Description: PDB Classifiation: VIRUS
107. Structure of a cell-entry defective human adenovirus provides insights into precursor proteins and capsid maturation
Link: https://3d.nih.gov/entries/3DPX-017411
Description: PDB Classifiation: VIRUS
108. CRYSTAL STRUCTURE ANALYSIS OF NORWALK VIRUS CAPSID
Link: https://3d.nih.gov/entries/3DPX-001757
Description: PDB Classifiation: VIRUS
109. The cryo-EM structure of the head of the genome empited bacteriophage phi29
Link: https://3d.nih.gov/entries/3DPX-017670
Description: PDB Classifiation: VIRUS
110. Pseudo-atomic model of a fiberless isometric variant of bacteriophage phi29
Link: https://3d.nih.gov/entries/3DPX-017671
Description: PDB Classifiation: VIRUS
111. Hepatitis B virion
Link: https://3d.nih.gov/entries/3DPX-017718
Description: Hepatitis B virion from EMDB 1403. Model from UCSF ChimeraX, at a contour level of 3, using the NIH 3D "Volume Radial" representation.
112. Cryo-EM study of the Pseudomonas bacteriophage phiKZ.
Link: https://3d.nih.gov/entries/3DPX-001773
Description: This is a 3D model of the bacteriophage phiKZ based on the previously deposited reconstructions of the capsid (EMD-1392) and the tail (EMD-1393)
113. Cryo-EM structure of Dengue virus serotype 3 at 28 degrees C
Link: https://3d.nih.gov/entries/3DPX-017906
Description: PDB Classifiation: VIRUS
114. SINV
Link: https://3d.nih.gov/entries/3DPX-017926
Description: Model derived from the Cryo-EM structure of an alphavirus, Sindbis virus; Implication for alphavirus host-cell entry and assembly indicated by a 3.5 angstrom resolution cryo-EM structure. Chen, L.,...
115. Cryo electron tomography of fiberless bacteriophage T4
Link: https://3d.nih.gov/entries/3DPX-001796
Description: Sub-tomogram averaging of fiberless T4 phage
116. HIV-1 reverse transcriptase with bound RNA-DNA
Link: https://3d.nih.gov/entries/3DPX-018194
Description: This is a representation of the HIV-1 reverse transcriptase with a RNA-DNA complex. The structure includes the polymerase, the connection and the RNase H domains. It was modified from the structure...
117. Feline panleukopenia virus in complex with FAb from neutralizing antibody MAb E
Link: https://3d.nih.gov/entries/3DPX-003354
Description: This is a map of the FAb from neutralizing antibody MAb E interacting with FPV
118. Zika Virus
Link: https://3d.nih.gov/entries/3DPX-003399
Description: No description available
119. Cryo-EM of bacteriophage phi29 emptied particles treated by low pH CsCl-gradient-purified
Link: https://3d.nih.gov/entries/3DPX-003470
Description: The reconstruction of bacteriophage phi29 emptied particles treated by low pH and CsCl-gradient-purifiy.
120. BACTERIOPHAGE GA PROTEIN CAPSID
Link: https://3d.nih.gov/entries/3DPX-003585
Description: PDB Classifiation: VIRUS
121. Polio virus 1HXS
Link: https://3d.nih.gov/entries/3DPX-003589
Description: An early (2008) model of the polio virus capsid, taken from PDB 1HXS.
122. Crystal Structure of Israel acute Paralysis Virus
Link: https://3d.nih.gov/entries/3DPX-003598
Description: PDB Classifiation: VIRUS
123. The 3.5 A resolution structure of the Sputnik virophage by cryo-EM
Link: https://3d.nih.gov/entries/3DPX-003599
Description: PDB Classifiation: VIRUS
124. Crystal structure of infectious bursal disease virus VP2 subviral particle
Link: https://3d.nih.gov/entries/3DPX-003600
Description: PDB Classifiation: VIRUS LIKE PARTICLE
125. Structure of Zika virus at a resolution of 3.1 Angstrom
Link: https://3d.nih.gov/entries/3DPX-009584
Description: PDB Classifiation: VIRUS
126. Low Resolution Structure of STNV complexed with RNA
Link: https://3d.nih.gov/entries/3DPX-009607
Description: PDB Classifiation: VIRUS
127. Satellite Tobacco Necrosis Virus (STNV) virus like particle in complex with the B3 aptamer
Link: https://3d.nih.gov/entries/3DPX-009608
Description: PDB Classifiation: VIRUS
128. Crystal structure of the Hepatitis E Virus-like Particle
Link: https://3d.nih.gov/entries/3DPX-009625
Description: PDB Classifiation: VIRUS
129. Crystal structure of Coxsackievirus A24v soaked with 6'-Sialyllactose (6SL)
Link: https://3d.nih.gov/entries/3DPX-009677
Description: PDB Classifiation: VIRUS
130. Crystal Structure of Human Enterovirus D68
Link: https://3d.nih.gov/entries/3DPX-009678
Description: PDB Classifiation: VIRUS
131. X-ray structure of a human Kobuvirus: Aichi virus A (AiV)
Link: https://3d.nih.gov/entries/3DPX-009679
Description: PDB Classifiation: VIRUS
132. Structure of Triatoma Virus (TrV)
Link: https://3d.nih.gov/entries/3DPX-009680
Description: PDB Classifiation: VIRUS
133. DESMODIUM YELLOW MOTTLE TYMOVIRUS
Link: https://3d.nih.gov/entries/3DPX-009681
Description: PDB Classifiation: Virus/RNA
134. 1.45 Angstrom Structure of STNV coat protein
Link: https://3d.nih.gov/entries/3DPX-009697
Description: PDB Classifiation: VIRUS
135. Human bocavirus 3
Link: https://3d.nih.gov/entries/3DPX-009698
Description: PDB Classifiation: VIRUS LIKE PARTICLE
136. Porcine Parvovirus Capsid
Link: https://3d.nih.gov/entries/3DPX-009728
Description: PDB Classifiation: VIRUS
137. The structure of B19 parvovirus capsid
Link: https://3d.nih.gov/entries/3DPX-009773
Description: PDB Classifiation: VIRUS
138. Zika Virion (Pedestal Mounted)
Link: https://3d.nih.gov/entries/3DPX-009790
Description: The outer surface (blue) of the Zika virus (magnified 2.5 million times) is made of one type of protein molecule that connects to itself to form 20 equilateral triangles. This strong, simple shell ...
139. Influenza Virion Cutaway Model (Pedestal Mounted)
Link: https://3d.nih.gov/entries/3DPX-009791
Description: This influenza virus is magnified in size 1 million times. It is an accurate representation of proteins, cytoplasm and genetic material, created using CellPACK. The virus’s taller proteins (...
140. Rhinovirus
Link: https://3d.nih.gov/entries/3DPX-009814
Description: No description available
141. Cryoelectron microscopy of dengue-Fab E104 complex at pH 5.5
Link: https://3d.nih.gov/entries/3DPX-009939
Description: PDB Classifiation: VIRUS/IMMUNE SYSTEM
142. X-ray structure of CPMV top component
Link: https://3d.nih.gov/entries/3DPX-009949
Description: PDB Classifiation: VIRUS
143. Structure of the Macrobrachium rosenbergii Nodavirus
Link: https://3d.nih.gov/entries/3DPX-009950
Description: PDB Classifiation: VIRUS LIKE PARTICLE
144. Cryo electron tomography of infective bacteriophage T4
Link: https://3d.nih.gov/entries/3DPX-001842
Description: Sub-tomogram averaging of wild type T4 phage
145. Insight into the assembly of viruses with vertical single beta-barrel major capsid proteins
Link: https://3d.nih.gov/entries/3DPX-001910
Description: Reconstruction of Haloarcula hispanica icosahedral virus 2 (HHIV-2. The recommended contour level (threshold) suggested is for visualizing the capsid in Chimera. Lower thresholds are required for e...
146. Haloarcula hispanica icosahedral virus 2
Link: https://3d.nih.gov/entries/3DPX-001927
Description: Haloarcula hispanica icosahedral virus 2, rendered with Chimera and split into two halves.
147. Hepatitis B capsid
Link: https://3d.nih.gov/entries/3DPX-001929
Description: Rendered in Chimera
148. CryoEM structure of Dengue virus
Link: https://3d.nih.gov/entries/3DPX-000193
Description: PDB Classifiation: VIRUS
149. Crystal Structure of Foot and Mouth Disease Virus A22 Serotype
Link: https://3d.nih.gov/entries/3DPX-001930
Description: PDB Classifiation: VIRUS
150. Foot and Mouth Disease Virus
Link: https://3d.nih.gov/entries/3DPX-001932
Description: Rendered in Chimera and split into two halves
151. Cryo-electron tomography reconstruction of native HIV-1 core
Link: https://3d.nih.gov/entries/3DPX-002002
Description: The figure shows the simulated density of all-atom HIV-1 capsid model (3J3Y) overlaid with a slice of HIV-1 core tomogram.
152. Acinetobacter baumannii 118362 family 2A cargo-loaded encapsulin shell
Link: https://3d.nih.gov/entries/3DPX-021432
Description: PDB Classifiation: VIRUS LIKE PARTICLE
153. IBDV 7VRP
Link: https://3d.nih.gov/entries/3DPX-021648
Description: Cryo-EM model of a IBDV T=13 capsid.
154. S protein of SARS-CoV-2 in the locked conformation
Link: https://3d.nih.gov/entries/3DPX-016693
Description: PDB Classifiation: VIRUS
155. West Nile virus in complex with the Fab fragment of a neutralizing monoclonal antibody.
Link: https://3d.nih.gov/entries/3DPX-000167
Description: map of West Nile Virus complexed with Fab fragment of neutralizing antibody E16
156. AAV2
Link: https://3d.nih.gov/entries/3DPX-012131
Description: Structure of Adeno-associated virus type 2 VLP DOI: 10.2210/pdb5IPI/pdb EMDataResource: EMD-8099 Classification: VIRUS LIKE PARTICLE Organism(s): Adeno-associated virus 2...
157. CryoEM structure of the full virion of a human rhinovirus C
Link: https://3d.nih.gov/entries/3DPX-012183
Description: CryoEM structure of the full virion of a human rhinovirus C
158. Bacteriophage CUS-3 asymmetric reconstruction
Link: https://3d.nih.gov/entries/3DPX-001234
Description: Bacteriophage CUS-3 asymmetric reconstruction
159. Reovirus core
Link: https://3d.nih.gov/entries/3DPX-001279
Description: PDB Classifiation: VIRUS
160. Three Dimensional Structure of the Epstein-Barr Virus Capsid.
Link: https://3d.nih.gov/entries/3DPX-001280
Description: EBV capsid purified over saccharose
161. Structure of native bacteriophage P68
Link: https://3d.nih.gov/entries/3DPX-012818
Description: PDB Classifiation: VIRUS
162. Structural analysis of PRD1
Link: https://3d.nih.gov/entries/3DPX-012823
Description: PDB Classifiation: VIRUS
163. Structure of Adeno-associated virus type 2 VLP
Link: https://3d.nih.gov/entries/3DPX-012826
Description: PDB Classifiation: VIRUS LIKE PARTICLE
164. Virus
Link: https://3d.nih.gov/entries/3DPX-012859
Description: Virus
165. Bacteriophage P22 mature virion capsid protein
Link: https://3d.nih.gov/entries/3DPX-012922
Description: PDB Classifiation: VIRUS
166. MERS-CoV S complex with human neutralizing LCA60 antibody Fab fragment (state 2)
Link: https://3d.nih.gov/entries/3DPX-013026
Description: PDB Classifiation: VIRUS
167. MERS-CoV complex with human neutralizing LCA60 antibody Fab fragment (state 1)
Link: https://3d.nih.gov/entries/3DPX-013027
Description: PDB Classifiation: VIRUS
168. SARS-CoV complex with human neutralizing S230 antibody Fab fragment (state 1)
Link: https://3d.nih.gov/entries/3DPX-013028
Description: PDB Classifiation: VIRUS
169. SARS-CoV complex with human neutralizing S230 antibody Fab fragment (state 2)
Link: https://3d.nih.gov/entries/3DPX-013029
Description: PDB Classifiation: VIRUS
170. PF1 VIRUS STRUCTURE: HELICAL COAT PROTEIN AND DNA WITH PARAXIAL PHOSPHATES
Link: https://3d.nih.gov/entries/3DPX-013083
Description: PDB Classifiation: VIRUS
171. INOVIRUS (FILAMENTOUS BACTERIOPHAGE) STRAIN PF1 MAJOR COAT PROTEIN ASSEMBLY
Link: https://3d.nih.gov/entries/3DPX-013084
Description: PDB Classifiation: VIRUS
172. Near-atomic resolution structure of a plant geminivirus determined by electron cryo-microscopy.
Link: https://3d.nih.gov/entries/3DPX-013125
Description: PDB Classifiation: VIRUS
173. Sulfolobus islandicus filamentous virus (SIFV) capsid dimer
Link: https://3d.nih.gov/entries/3DPX-014740
Description: Capsid heterodimer of the Sulfolobus islandicus filamentous virus (SIFV). The heterodimer consists of chains A and a from PDB entry 6WQ2 (All other chains and the DNA structure were remov...
174. SARS-CoV-2 Virion (PathogenAR Version)
Link: https://3d.nih.gov/entries/3DPX-014820
Description: This SARS-CoV-2 virion has been updated from earlier version to include full-length open and closed spikes from https://pubs.acs.org/doi/10.1021/acs.jpcb.0c04553?goto=supporting-info. PDB 6vs...
175. HIV Capsid, Envelope and RNA (deconstructible)
Link: https://3d.nih.gov/entries/3DPX-014884
Description: This model of HIV consists of the envelope, capsid and RNA as separate pieces. The fully assembled model can be disassembled and used to teach about the structure of the HIV virus. Mod...
176. Polio Capsid and RNA (deconstructible)
Link: https://3d.nih.gov/entries/3DPX-014933
Description: This model of poliovirus consists of the capsid and RNA as separate pieces. The fully assembled model can be disassembled and used to teach about the structure of the poliovirus. Model...
177. Influenza Capsid, Envelope and RNA (deconstructible)
Link: https://3d.nih.gov/entries/3DPX-014934
Description: This model of the influenza viron consists of the envelope, capsid+ RNA as separate pieces. Please note that the capsid + RNA are a single piece. The fully assembled model can be disas...
178. Cryo-EM structure of full echovirus 11 particle at pH 7.4
Link: https://3d.nih.gov/entries/3DPX-014952
Description: Cryo-EM structure of full echovirus 11 particle at pH 7.4
179. Cryo-EM single particle reconstruction of Rosellinia necatrix megabirnavirus 1 reconstructed with the mixture of empty and full particles
Link: https://3d.nih.gov/entries/3DPX-014953
Description: Reconstruction of RnMBV1
180. Three-dimensional structure of a protozoal dsRNA virus that infects enteric pathogen Giardia lamblia
Link: https://3d.nih.gov/entries/3DPX-014954
Description: Icosahedral reconstruction of giardiavirus
181. the authentic SARS-CoV-2 virus
Link: https://3d.nih.gov/entries/3DPX-014976
Description: the authentic SARS-CoV-2 virus
182. CryoEM icosahedral reconstruction of AHSV7
Link: https://3d.nih.gov/entries/3DPX-014991
Description: AHSV7 truncated VP2 filled
183. Structure of RNA polymerase complex and genome within a dsRNA virus provides insights into the mechanisms of transcription and assembly
Link: https://3d.nih.gov/entries/3DPX-014992
Description: PDB Classifiation: VIRUS
184. Fako virus
Link: https://3d.nih.gov/entries/3DPX-014997
Description: PDB Classifiation: VIRUS
185. The Atomic Structure of Rice dwarf Virus (RDV)
Link: https://3d.nih.gov/entries/3DPX-014998
Description: PDB Classifiation: VIRUS
186. Crystal structure of hepatitis A virus
Link: https://3d.nih.gov/entries/3DPX-015005
Description: PDB Classifiation: VIRUS
187. Bacteriophage
Link: https://3d.nih.gov/entries/3DPX-001501
Description: This model shows is of a Pseudomonas Bacteriophage phiKZ, rendered from EMDB 1415 with Chimera.
188. OSU Rotavirus non-trypsinized Triple Layered Particle
Link: https://3d.nih.gov/entries/3DPX-001513
Description: 3DR of non-tripsinized OSU strain rotavirus TLP
189. Rotavirus
Link: https://3d.nih.gov/entries/3DPX-001515
Description: Rendered from EMDB 2576 with Chimera. Rotavirus is a genus of double-stranded RNA virus in the family Reoviridae. This model is presented in two forms; as a whole object, and as two sli...
190. Electron cryo-microscopy of nanobody AB6 in complex with poliovirus P1/Mahoney
Link: https://3d.nih.gov/entries/3DPX-001517
Description: reconstruction of nanobody AB6 in complex with poliovirus P1/Mahoney
191. Polio Virus Capsid
Link: https://3d.nih.gov/entries/3DPX-001519
Description: Polio Virus Capsid, modeled from EMDB 5886. This model includes files that have been sliced to facilitate printing on FDM machines.
192. Kinetic and Structural Analysis of Coxsackievirus B3 Receptor Interactions and Formation of the A-particle
Link: https://3d.nih.gov/entries/3DPX-001523
Description: Reconstruction of CVB3 complexed with CAR
193. Coxsackievirus Capsid
Link: https://3d.nih.gov/entries/3DPX-001524
Description: No description available
194. Feline Calcivirus Capsid
Link: https://3d.nih.gov/entries/3DPX-001525
Description: No description available
195. Six-fold averaged structure of lemon-shaped virus His1 using Cryo-ET subtomogram averaging
Link: https://3d.nih.gov/entries/3DPX-001526
Description: Six-fold averaged refined map of Lemon-shaped archaeal virus His1
196. CRYSTAL STRUCTURE OF MS2 CAPSIDS WITH MUTATIONS IN THE SUBUNIT FG LOOP
Link: https://3d.nih.gov/entries/3DPX-015266
Description: PDB Classifiation: VIRUS
197. MS2-RNA HAIRPIN (G-10) COMPLEX
Link: https://3d.nih.gov/entries/3DPX-015267
Description: PDB Classifiation: VIRUS/RNA
198. HIS1 Virus Capsid
Link: https://3d.nih.gov/entries/3DPX-001527
Description: No description available
199. Electron cryo-microscopy of human papillomavirus 16 and H16.V5 Fab fragments
Link: https://3d.nih.gov/entries/3DPX-001528
Description: Reconstruction of mature human papillomavirus 16 capsid complexed with Fab fragments after 72 hr incubation
200. Human Papillomavirus Capsid
Link: https://3d.nih.gov/entries/3DPX-001529
Description: No description available
201. HIV Virion (PathogenAR)
Link: https://3d.nih.gov/entries/3DPX-015438
Description: This HIV virion is featured in the PathogenAR HIV: Antiretroviral Drugs module. The .fbx version has an organized hierarchy of mapped components and was the version used to create the ap...
202. HIV Capsid (PathogenAR)
Link: https://3d.nih.gov/entries/3DPX-015448
Description: This model was used for the HIV/AIDS: Antiretroviral Drugs module in PathogenAR. HIV Capsid was generated using CellPack in Chimera using recipe HIV-1_0.1.6 (Johnson et al. 2014). The FBX vers...
203. FOOT-AND-MOUTH DISEASE VIRUS/ OLIGOSACCHARIDE RECEPTOR COMPLEX.
Link: https://3d.nih.gov/entries/3DPX-015525
Description: PDB Classifiation: VIRUS
204. High resolution cryo EM analysis of HPV16 identifies minor structural protein L2 and describes capsid flexibility
Link: https://3d.nih.gov/entries/3DPX-015782
Description: PDB Classifiation: VIRUS
205. The cryo-EM structure of human papillomavirus type 58 pseudovirus
Link: https://3d.nih.gov/entries/3DPX-015783
Description: PDB Classifiation: VIRUS
206. L1 protein of human papillomavirus 6
Link: https://3d.nih.gov/entries/3DPX-015788
Description: PDB Classifiation: VIRUS LIKE PARTICLE
207. Cryo-EM reconstruction of the giant Mimivirus using C5 symmetry
Link: https://3d.nih.gov/entries/3DPX-015801
Description: This is a volume map of Mimivirus reconstrument averaged by C5 symmetry
208. Crystal structure of IBDV T1 virus-like particle reveals a missing link in icosahedral viruses evolution
Link: https://3d.nih.gov/entries/3DPX-001582
Description: PDB Classifiation: VIRUS
209. Adeno-Associated Virus serotype 4
Link: https://3d.nih.gov/entries/3DPX-015822
Description: Capsid monomer for Adeno-Associated Virus serotype 4. PDB data modeled and converted to STL using Chimera.
210. Sub-2 Angstrom Ewald Curvature-Corrected Single-Particle Cryo-EM Reconstruction of AAV-2 L336C
Link: https://3d.nih.gov/entries/3DPX-015823
Description: PDB Classifiation: VIRUS LIKE PARTICLE
211. CryoEM reconstructions of PV2 complexed with deglycosylated CD155
Link: https://3d.nih.gov/entries/3DPX-010445
Description: CryoEM reconstructions of PV2 complexed with deglycosylated CD155
212. Cryo-EM Structure of Hepatitis B virus T=3 capsid in complex with the fluorescent allosteric modulator HAP-TAMRA
Link: https://3d.nih.gov/entries/3DPX-010454
Description: No description available
213. Structure of Seneca Valley Virus in acidic conditions
Link: https://3d.nih.gov/entries/3DPX-010503
Description: No description available
214. Cyro-EM structure of DNA-full Medusavirus
Link: https://3d.nih.gov/entries/3DPX-010510
Description: Cryo-EM structure of DNA-full Medusavirus
215. Visualizing the structural changes of bacteriophage epsilon15 and its Salmonella host during infection
Link: https://3d.nih.gov/entries/3DPX-010703
Description: Empty capsid attached to membrane
216. Norovirus virus-like particle
Link: https://3d.nih.gov/entries/3DPX-010783
Description: No description available
217. Atomic structure of a non-enveloped virus reveals pH sensors for a coordinated process of cell entry
Link: https://3d.nih.gov/entries/3DPX-010794
Description: The whole map of BTV virion at pH 8.8 without imposing a reverse B-factor to boost high frequency signals
218. Atomic structure of a non-enveloped virus reveals pH sensors for a coordinated process of cell entry
Link: https://3d.nih.gov/entries/3DPX-010795
Description: The whole map of BTV virion at pH 3.4 without imposing a reverse B-factor to boost high frequency signals
219. Full virus map of brome mosaic virus
Link: https://3d.nih.gov/entries/3DPX-010855
Description: PDB Classifiation: VIRUS
220. Dengue 1 cryo-EM reconstruction
Link: https://3d.nih.gov/entries/3DPX-010857
Description: PDB Classifiation: VIRUS
221. Phage Qbeta in complex with MurA
Link: https://3d.nih.gov/entries/3DPX-010909
Description: Enterobacteria phage Qbeta virion with MurA
222. CryoEM single particle reconstruction of prolate head of bacteriophage T4
Link: https://3d.nih.gov/entries/3DPX-011010
Description: Reconstruction of empty T4 prolate head
223. The structure of ''breathing'' dengue virus.
Link: https://3d.nih.gov/entries/3DPX-011028
Description: PDB Classifiation: VIRUS
224. Polyomavirus 1SIE
Link: https://3d.nih.gov/entries/3DPX-011102
Description: No description available
225. CryoEM structure of Dengue virus, full map
Link: https://3d.nih.gov/entries/3DPX-001114
Description: Dengue virus capsid, full map
226. Cryo-EM structure of full Echovirus 6 particle at PH 5.5
Link: https://3d.nih.gov/entries/3DPX-011183
Description: Cryo-EM structure of full Echovirus 6 particle at PH 5.5
227. Structure of Dengue Virus
Link: https://3d.nih.gov/entries/3DPX-001119
Description: PDB Classifiation: VIRUS
228. Cryo-EM structure of full Echovirus 6 particle at PH 7.4
Link: https://3d.nih.gov/entries/3DPX-011258
Description: Cryo-EM structure of full Echovirus 6 particle at PH 7.4
229. CryoEM Structure of human defensin 5 bound to a neutralization sensitive adenovirus chimera
Link: https://3d.nih.gov/entries/3DPX-011440
Description: 3D reconstruction of defensin complexed with a neutralization sensitive adenovirus chimera
230. Crystal structure of Thermotoga maritima encapsulin
Link: https://3d.nih.gov/entries/3DPX-001363
Description: PDB Classifiation: STRUCTURAL PROTEIN/VIRUS LIKE PARTICLE
231. Structure of black queen cell virus
Link: https://3d.nih.gov/entries/3DPX-013722
Description: PDB Classifiation: VIRUS
232. Structural Studies on the Authentic Mumps Virus Nucleocapsid Showing Uncoiling by the Phosphoprotein
Link: https://3d.nih.gov/entries/3DPX-001376
Description: Mumps virus nucleocapsid in complex with the mumps virus phosphoprotein C-terminal nucleocapsid binding domain
233. 3D reconstruction of TMV at 4.5A from film micrographs using Frealix
Link: https://3d.nih.gov/entries/3DPX-001377
Description: TMV map filtered using a negative B-factor, with amplitude matching against density derived from fitted atomic coordinates, a figure-of-merit filter, and subsequent helical symmetrization, as detai...
234. Cross-Neutralizing Human Anti-Poliovirus Antibodies Bind the Recognition Site for Cellular Receptor
Link: https://3d.nih.gov/entries/3DPX-001379
Description: Cryo-EM reconstruction of type 2 polio virus with A12 Fab attached
235. Cryo-EM reconstruction of empty enterovirus 71 in complex with a neutralizing antibody E19
Link: https://3d.nih.gov/entries/3DPX-001380
Description: Reconstruction of human enterovirus 71 with bound Fab fragments of antibody E19
236. Cryo-EM structure of Dengue virus serotype 1 complexed with Fab fragments of human antibody 1F4
Link: https://3d.nih.gov/entries/3DPX-001381
Description: Cryo-EM reconstruction of Dengue virus serotype 1 complexed with Fab fragments of human antibody 1F4
237. Cryo-EM structure of Poliovirus 135S particles
Link: https://3d.nih.gov/entries/3DPX-001382
Description: Poliovirus 135S particle
238. Electron cryo-microscopy of human cytomegalovirus capsid
Link: https://3d.nih.gov/entries/3DPX-001383
Description: Reconstruction of human cytomegalovirus (HCMV) capsids purified from cell nuclei
239. Electron cryo-microscopy of human cytomegalovirus virion
Link: https://3d.nih.gov/entries/3DPX-001384
Description: Reconstruction of human cytomegalovirus (HCMV) virion. Only the icosahedral capsid and orderly bound tegument proteins are visible in the density map. Other tegument proteins and the envelope are a...
240. Electron cryo-microscopy of human cytomegalovirus SCP-deficient particles
Link: https://3d.nih.gov/entries/3DPX-001385
Description: Reconstruction of human cytomegalovirus (HCMV) SCP-deficient particles. The viral particles were harvested from cells expressing a ribozyme targeting HCMV smallest capsid protein (SCP) mRNA.
241. The 14 A Cryo-EM structure of Dengue virus at 37C
Link: https://3d.nih.gov/entries/3DPX-001386
Description: Reconstruction of one particles class in the "breathing" dengue virus particles
242. Coxsackievirus A7 (CAV7) full capsid reconstruction at 8.23 angstrom resolution.
Link: https://3d.nih.gov/entries/3DPX-001390
Description: This a three-dimensional reconstruction of coxsackievirus A7 (CAV7) at 8.23 angstrom resolution.
243. The Crystallographic Structure of Panicum Mosaic Virus
Link: https://3d.nih.gov/entries/3DPX-001416
Description: PDB Classifiation: VIRUS/RNA
244. Cryo-EM structure of CV-A10 mature virion
Link: https://3d.nih.gov/entries/3DPX-010067
Description: No description available
245. AAV dj
Link: https://3d.nih.gov/entries/3DPX-010098
Description: AAV DJ capsid was a man-made creation which consists various part of WT AAV capsid peptide.
246. AAV2
Link: https://3d.nih.gov/entries/3DPX-010099
Description: The Atomic Structure of Adeno-Associated Virus (AAV-2), a Vector for Human Gene Therapy
247. AAV 6
Link: https://3d.nih.gov/entries/3DPX-010100
Description: Structure-function Analysis of Receptor Binding in Adeno-Associated Virus Serotype 6 (AAV-6)
248. AAV 3B
Link: https://3d.nih.gov/entries/3DPX-010101
Description: Crystal structure of adeno-associated virus serotype 3B
249. AAV 9
Link: https://3d.nih.gov/entries/3DPX-010102
Description: Structural Characterization of Adeno-Associated Virus Serotype 9
250. AAV8
Link: https://3d.nih.gov/entries/3DPX-010104
Description: Structure of Adeno-Associated virus serotype 8
251. AAV 5
Link: https://3d.nih.gov/entries/3DPX-010105
Description: Structural insights of Adeno-Associated virus 5. A gene therapy Vector for Cystic Fibrosis
252. AAV 1
Link: https://3d.nih.gov/entries/3DPX-010106
Description: Structure to Function Correlations for Adeno-associated Virus Serotype 1
253. AAV 4
Link: https://3d.nih.gov/entries/3DPX-010107
Description: Structurally mapping the diverse phenotype of Adeno-Associated Virus serotype 4
254. Life in the extremes: atomic structure of Sulfolobus Turreted Icosahedral Virus
Link: https://3d.nih.gov/entries/3DPX-000103
Description: PDB Classifiation: VIRUS
255. MS2 COAT PROTEIN/RNA COMPLEX
Link: https://3d.nih.gov/entries/3DPX-011569
Description: PDB Classifiation: Virus/RNA
256. Crystal Structure of Human Enterovirus D68 in Complex with Pleconaril
Link: https://3d.nih.gov/entries/3DPX-011656
Description: PDB Classifiation: VIRUS
257. Structure of deformed wing virus carrying the GFP gene
Link: https://3d.nih.gov/entries/3DPX-011659
Description: No description available
258. The structure of echovirus type 12 bound to a two-domain fragment of its cellular attachment protein decay-accelerating factor (CD 55).
Link: https://3d.nih.gov/entries/3DPX-011695
Description: Three dimensional reconstruction of echovirus type 12 bound to domains three and four of its cellular receptor decay-accelerating factor. Calculated from cryo-negative stain images
259. CryoEM 3D reconstruction of full Triatoma Virus
Link: https://3d.nih.gov/entries/3DPX-011929
Description: Full TrV particle 3D reconstruction
260. Covid-19
Link: https://3d.nih.gov/entries/3DPX-013270
Description: 3D model of the Covid-19 virus, based on the image “Illustration of the ultrastructure of the Covid-19 virus” (CDC/SCIENCE PHOTO LIBRARY), from https://www.newscientist.com/term/covid-19/ download ...
261. SARS CoV-2 Virion (NIAID)
Link: https://3d.nih.gov/entries/3DPX-013323
Description: General:This SARS-CoV2 Virion model was created based on the latest available data in the Protein Data Bank (PDB) and Imaging studies conducted by NIAID labs. The orange spikes represent the ...
262. Influenza Virion (PathogenAR)
Link: https://3d.nih.gov/entries/3DPX-013373
Description: This model was created for PathogenAR, an augmented reality program being developed by the Biovisualization Program in the Bioinformatics and Computational Biosciences Branch in the Office of ...
263. Structural Characterization of Adeno-Associated Virus Serotype 9
Link: https://3d.nih.gov/entries/3DPX-014356
Description: PDB Classifiation: VIRUS
264. Cryo-electron microscopy of hepatitis B virions reveals variability in envelope capsid interactions.
Link: https://3d.nih.gov/entries/3DPX-015985
Description: 3d MAP OF SUB-SET OF HEPATITIS B VIRUS Particles (COMPACT PARTICLES; grouped in the same class)
265. WT Hepatitis B core protein capsid
Link: https://3d.nih.gov/entries/3DPX-015986
Description: PDB Classifiation: VIRUS LIKE PARTICLE
266. Hepatitis B Nucleocapsid (PathogenAR)
Link: https://3d.nih.gov/entries/3DPX-015987
Description: The capsid was built in Molecular Maya from PDB 6HTX. The mesh was further processed in ZBrush. An illustration of the life cycle from PathogenAR is included, with the step associated with th...
267. Papillomavirus capsid and minichromosome V1
Link: https://3d.nih.gov/entries/3DPX-016000
Description: This model is one of two versions of the papillomavirus generated in support of: Porter SS, Liddle JC, Browne K, Pastrana DV, Garcia BA, Buck CB, Weitzman MD, McBride AA. Histone Modifications...
268. Papillomavirus capsid and minichromosome V2
Link: https://3d.nih.gov/entries/3DPX-016001
Description: This model is one of two versions of the papillomavirus generated in support of: Porter SS, Liddle JC, Browne K, Pastrana DV, Garcia BA, Buck CB, Weitzman MD, McBride AA. Histone Modifications...
269. cryo-EM reconstruction of West Nile virus
Link: https://3d.nih.gov/entries/3DPX-016130
Description: This is a reconstruction map of West Nile virus
270. Atomic-Resolution Cryo-EM Structure of AAV2 VLP
Link: https://3d.nih.gov/entries/3DPX-016168
Description: PDB Classifiation: VIRUS LIKE PARTICLE
271. HPV Capsid - PathogenAR
Link: https://3d.nih.gov/entries/3DPX-016170
Description: This model of the HPV capsid was used in PathogenAR for the Papilloma: The HPV Minichromosome Module.Note: This model has materials and color that can only be seen in 3D mode on NIH 3D at...
272. Cartoon of HIV
Link: https://3d.nih.gov/entries/3DPX-000006
Description: Cartoon model of HIV virus. Unliganded gp120 trimer derived from EMDB 5019 (purple); yellow: viral membrane; red, blue, green: human proteins captured upon viral budding that disguise the virus fro...
273. L1 protein of human papillomavirus 16
Link: https://3d.nih.gov/entries/3DPX-000666
Description: PDB Classifiation: VIRUS
274. Bovine papillomavirus type 1 outer capsid
Link: https://3d.nih.gov/entries/3DPX-000671
Description: PDB Classifiation: VIRUS
275. BINDING OF THE ANTIVIRAL DRUG WIN51711 TO THE SABIN STRAIN OF TYPE 3 POLIOVIRUS: STRUCTURAL COMPARISON WITH DRUG BINDING IN RHINOVIRUS 14
Link: https://3d.nih.gov/entries/3DPX-000681
Description: PDB Classifiation: VIRUS
276. TMV COAT PROTEIN REFINED FROM THE 4-LAYER AGGREGATE
Link: https://3d.nih.gov/entries/3DPX-000696
Description: PDB Classifiation: VIRUS
277. VISUALIZATION OF PROTEIN-NUCLEIC ACID INTERACTIONS IN A VIRUS. REFINED STRUCTURE OF INTACT TOBACCO MOSAIC VIRUS AT 2.9 ANGSTROMS RESOLUTION BY X-RAY FIBER DIFFRACTION
Link: https://3d.nih.gov/entries/3DPX-000698
Description: PDB Classifiation: Virus/RNA
278. Molecular Structure of Unliganded Native HIV-1 gp120 trimer: Spike region
Link: https://3d.nih.gov/entries/3DPX-000702
Description: unliganded HIV-1 BaL spike
279. REFINEMENT OF THE SABIN STRAIN OF TYPE 3 POLIOVIRUS AT 2.4 ANGSTROMS AND THE CRYSTAL STRUCTURES OF ITS VARIANTS AT 2.9 ANGSTROMS RESOLUTION
Link: https://3d.nih.gov/entries/3DPX-000710
Description: PDB Classifiation: VIRUS
280. Crystal structure of HK97 Prohead II
Link: https://3d.nih.gov/entries/3DPX-000727
Description: PDB Classifiation: VIRUS
281. HSV bubblegram imaging
Link: https://3d.nih.gov/entries/3DPX-007461
Description: reconstruction of the HSV C-capsid particles in 7th exposure.
282. CryoEM structure of rhinovirus B14 in complex with C5 Fab (33 degrees Celsius, molar ratio 1:3, full particle)
Link: https://3d.nih.gov/entries/3DPX-007675
Description: Inner density masked out. The map is sharpened.
283. Influenza Virion Cutaway Model
Link: https://3d.nih.gov/entries/3DPX-007837
Description: This influenza virus is magnified in size 1 million times. It is an accurate representation of proteins, cytoplasm and genetic material, created using CellPACK. The virus’s taller proteins (...
284. Cutaway model of HIV
Link: https://3d.nih.gov/entries/3DPX-007838
Description: Cutaway model of HIV (Human immunodeficiency virus) showing the internal composition and nucleocapsid. Protein molecules make up the capsid (light blue), a shell which protects the virus’s gen...
285. Ebola Virus Cutaway Model
Link: https://3d.nih.gov/entries/3DPX-007856
Description: You are seeing only 1-2% of an entire Ebola virus. A helix of protein (yellow) encloses the virus’s genetic material (pink). One Ebola virus may contain up to ten identical packets of genetic mater...
286. FLiP major capsid protein
Link: https://3d.nih.gov/entries/3DPX-007918
Description: PDB Classifiation: VIRUS
287. Zika Virus Full Capsid
Link: https://3d.nih.gov/entries/3DPX-007924
Description: No description available
288. High resolution cryo-EM maps of Human Papillomavirus 16 reveal L2 location and heparin-induced conformational changes
Link: https://3d.nih.gov/entries/3DPX-007937
Description: PDB Classifiation: VIRUS LIKE PARTICLE
289. High resolution cryo-EM maps of Human papillomavirus 16 reveal L2 location and heparin-induced conformational changes
Link: https://3d.nih.gov/entries/3DPX-007938
Description: PDB Classifiation: VIRUS LIKE PARTICLE
290. Cryo-EM structure of thermally stable Zika virus strain H/PF/2013
Link: https://3d.nih.gov/entries/3DPX-007955
Description: None
291. Bacteriophage T4 isometric capsid
Link: https://3d.nih.gov/entries/3DPX-007978
Description: PDB Classifiation: VIRUS
292. Ebola Virion Cutaway Model (Pedestal Mounted)
Link: https://3d.nih.gov/entries/3DPX-008050
Description: This model of Ebola virus is magnified 1 million times, though only 1-2% of it is visible. A helix of protein (yellow) encloses the virus’s genetic material (pink). One Ebola virus may contain up t...
293. Zika Virion
Link: https://3d.nih.gov/entries/3DPX-008051
Description: The outer surface (blue) of the Zika virus (magnified 2.5 million times) is made of one type of protein molecule that connects to itself to form 20 equilateral triangles. This strong, simple shell ...
294. Structure of Coxsackievirus A6 (CVA6) virus A-particle
Link: https://3d.nih.gov/entries/3DPX-008083
Description: None
295. Structure of Coxsackievirus A6 (CVA6) virus A-particle
Link: https://3d.nih.gov/entries/3DPX-008085
Description: PDB Classifiation: VIRUS
296. Poliovirus 160S particle and C3 Fab complex at 11.1 Angstrom resolution
Link: https://3d.nih.gov/entries/3DPX-008138
Description: This is a map of poliovirus 160S particle and C3 Fab complex.
297. CryoEM structure of Dengue virus, partial map
Link: https://3d.nih.gov/entries/3DPX-008339
Description: 3-fold averaged Dengue virus capsid E:M:M:E hetero-dimer
298. cryo-EM reconstruction of immature dengue virus
Link: https://3d.nih.gov/entries/3DPX-008341
Description: Reconstruction of immature dengue viral particles
299. The 2.3 A structure of porcine circovirus 2
Link: https://3d.nih.gov/entries/3DPX-008348
Description: PDB Classifiation: VIRUS
300. NODAMURA VIRUS
Link: https://3d.nih.gov/entries/3DPX-008367
Description: PDB Classifiation: VIRUS
301. ATOMIC MODEL FOR BLUETONGUE VIRUS (BTV) CORE
Link: https://3d.nih.gov/entries/3DPX-008370
Description: PDB Classifiation: VIRUS
302. Human Hepatitis B Virus T=4 capsid, strain adyw
Link: https://3d.nih.gov/entries/3DPX-000839
Description: PDB Classifiation: VIRUS
303. HSV Capsid
Link: https://3d.nih.gov/entries/3DPX-008414
Description: No description available
304. Cryo-EM structure of BK polyomavirus
Link: https://3d.nih.gov/entries/3DPX-008419
Description: Reconstruction of BK polyomavirus (sharpened/masked)
305. 2.6A 3D reconstruction of Tulane virus
Link: https://3d.nih.gov/entries/3DPX-008420
Description: reconstruction of Tulane virus
306. Structure of protozoan virus from the obligate human genitourinary parasite Trichomonas vaginalis
Link: https://3d.nih.gov/entries/3DPX-008421
Description: Icosahedral reconstruction of TVV1
307. COWPEA MOSAIC VIRUS (CPMV)
Link: https://3d.nih.gov/entries/3DPX-008423
Description: PDB Classifiation: VIRUS
308. SIMIAN VIRUS 40
Link: https://3d.nih.gov/entries/3DPX-008424
Description: PDB Classifiation: VIRUS
309. Structure of adeno-associated virus-2 in complex with neutralizing monoclonal antibody A20
Link: https://3d.nih.gov/entries/3DPX-008431
Description: PDB Classifiation: VIRUS/IMMUNE SYSTEM
310. The C-terminus of the herpes simplex virus pUL25 protein is required for release of viral genomes from capsids bound to nuclear pores.
Link: https://3d.nih.gov/entries/3DPX-008460
Description: Contour level 0.075
311. A 3.9 Angstrom resolution density map of the human cytomegalovirus (HCMV) capsid and its securing layer of pp150 tegument protein
Link: https://3d.nih.gov/entries/3DPX-008461
Description: Contour level 0.01
312. Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions
Link: https://3d.nih.gov/entries/3DPX-000855
Description: Model derived from PDB-formatted atomic coordinates (PDB ID: 3J7V) fitted to electron density (EMDB ID: 6034). Model created using VIPERdb data (entry 801) and UCSF Chimera "multi-scale models". ht...
313. The refined structure of Nudaurelia capensis omega virus
Link: https://3d.nih.gov/entries/3DPX-008872
Description: PDB Classifiation: VIRUS
314. Bluetongue virus structure reveals a sialic acid binding domain, amphipathic helices and a central coiled coil in the outer capsid proteins
Link: https://3d.nih.gov/entries/3DPX-000901
Description: BTV map
315. A quasi-atomic model of human adenovirus type 5 capsid.
Link: https://3d.nih.gov/entries/3DPX-009075
Description: Adenovirus pIX deletion mutant structure (multiple frozen and thawed sample)
316. High-Resolution Structure Analysis of Antibody V5 and U4 Conformational Epitope on Human Papillomavirus 16
Link: https://3d.nih.gov/entries/3DPX-009087
Description: PDB Classifiation: VIRUS/IMMUNE SYSTEM
317. High-Resolution Structure Analysis of Antibody V5 Conformational Epitope on Human Papillomavirus 16
Link: https://3d.nih.gov/entries/3DPX-009089
Description: PDB Classifiation: VIRUS
318. Structure of AAV-DJ, a Retargeted Gene Therapy Vector: Cryo-Electron Microscopy at 4.5A resolution
Link: https://3d.nih.gov/entries/3DPX-009099
Description: PDB Classifiation: VIRUS
319. ATOMIC STRUCTURE OF SINGLE-STRANDED DNA BACTERIOPHAGE PHIX174 AND ITS FUNCTIONAL IMPLICATIONS
Link: https://3d.nih.gov/entries/3DPX-009100
Description: PDB Classifiation: Virus/DNA
320. cryo-EM structure of human Aichi virus
Link: https://3d.nih.gov/entries/3DPX-009200
Description: PDB Classifiation: VIRUS
321. Aichi virus 1: empty particle
Link: https://3d.nih.gov/entries/3DPX-009201
Description: PDB Classifiation: VIRUS
322. CryoEM and 3D image reconstruction of Chilo Iridescent virus at 13 angstrom resolution
Link: https://3d.nih.gov/entries/3DPX-009272
Description: Chilo Iridescent virus at 13 angstrom resolution
323. CUCUMBER MOSAIC VIRUS
Link: https://3d.nih.gov/entries/3DPX-009356
Description: CUCUMBER MOSAIC VIRUS (STRAIN FNY)
324. Revised crystal structure of human adenovirus
Link: https://3d.nih.gov/entries/3DPX-009358
Description: PDB Classifiation: VIRUS
325. Improved cryoEM structure of human adenovirus type 5 with atomic details of minor proteins VI and VII
Link: https://3d.nih.gov/entries/3DPX-009359
Description: PDB Classifiation: VIRUS
326. STIV
Link: https://3d.nih.gov/entries/3DPX-009362
Description: Atomic structure of the 75 MDa extremophile Sulfolobus turreted icosahedral virus determined by CryoEM and X-ray crystallography
327. HUMAN RHINOVIRUS 16 COAT PROTEIN
Link: https://3d.nih.gov/entries/3DPX-009388
Description: PDB Classifiation: VIRUS
328. Myxococcus xanthus encapsulin protein (EncA)
Link: https://3d.nih.gov/entries/3DPX-009474
Description: PDB Classifiation: VIRUS LIKE PARTICLE
329. Foot-and-Mouth Disease Virus capsid
Link: https://3d.nih.gov/entries/3DPX-009518
Description: No description available
330. CryoEM structure of Ageratum Yellow Vein virus (AYVV)
Link: https://3d.nih.gov/entries/3DPX-009519
Description: PDB Classifiation: VIRUS
331. NMR Structure of the U3 RNA G-quadruplex
Link: https://3d.nih.gov/entries/3DPX-022041
Description: PDB Classification: VIRUS
332. HIV-1 TAR Binding Ligand
Link: https://3d.nih.gov/entries/3DPX-022067
Description: Structure-based drug design targeting an inactive RNA conformation: exploiting the flexibility of HIV-1 TAR RNA.
333. cryoEM structure of HIV-1 KAKA/G225R mature CA hexamer
Link: https://3d.nih.gov/entries/3DPX-022088
Description: PDB Classification: VIRUS
334. Structure of immature Dengue virus at low pH
Link: https://3d.nih.gov/entries/3DPX-021990
Description: immature Dengue virus particle at pH 6
335. HUMAN IMMUNODEFICIENCY VIRUS-1 OKAZAKI FRAGMENT, DNA-RNA CHIMERA, NMR, 11 STRUCTURES
Link: https://3d.nih.gov/entries/3DPX-022102
Description: The three-dimensional solution structure of the hybrid-chimeric duplex r(gcca)d(CTGC).d(GCAGTGGC) has been determined by two-dimensional NMR, restrained molecular dynamics (rMD), and NOE back-calcu...
336. Dimerization interface of the noncrystalline HIV-1 capsid protein lattice from solid state NMR spectroscopy of tubular assemblies
Link: https://3d.nih.gov/entries/3DPX-022093
Description: The HIV-1 capsid protein (CA) forms the capsid shell that encloses RNA within a mature HIV-1 virion. Previous studies by electron microscopy have shown that the capsid shell is primarily a triangul...